SE2610409

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7377
  • Oryza sativa
  • SE2610409
  • Tc1/Mariner
  • St39
  • Chr12:12757692-12757937
  • TA
  • TACTCCCTTCGTCCCAAAAAAAAGAC

Secondary structure and sequence

TSD    TIR
5'



3' 
                          ---        ----     CCAATGTAAATTAGTGGGGAGTAAAAATGCCTGAAATAGCCCTCATTATTGGAAAAAGTAGTAGTGGTGATAGATAGGTA
TACTCCCTTCGTCCCAAAAAAAAGAC   CAATCCTA    GCATC                                                                                
||||||||||||||||||||||||||   ||||||||    |||||                                                                                A
ATGAGGGAGGCAGGGTTTTTTTTTTG   TGAAGACC    ACTTA                                                                                
                          AGT        TCAA     AAATAGGTGGTTTTTATTTGAAGATGGCATCATAGTTGGGAGTCGTGTATTCTGCTCTTTAAAATAAGGAATTTATGGGA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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