Plant MITE

SE2610410

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_7378
Oryza sativa
SE2610410
Tc1/Mariner
St39
Chr04:19503539-19503781
TA
TACTCCCTCCGTCCTA

Secondary structure and sequence

TSD TIR

5'

3'

                AAATAAA    CTTATA     GA   --   TCCCAAAATAAACCAACTTCTACCTTCTTAGCTACCACCGGTTCACAAATCAAGAATTTTTATCCTTTAAATACCCCT
TACTCCCTCCGTCCTA       TCAA      GGTTT  ATT  TTG                                                                              
||||||||||||||||       ||||      |||||  |||  |||                                                                               
ATGAGGGAGGCAGGGT       AGTT      GGGAT  CGA  GGT                                                                              
                GTTTTAA    -----T     --   AG   TCTACTTTAATTCCTCTTTCCGTTTACTGGTTTTACAGGGATTAATCATTCTTTCAACATAACTACCTATACATCCAC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2610410

TACTCCCTCCGTCCTAAAATAAATCAACTTATAGGTTTGAATTTTGTCCCAAAATAAACCAACTTCTACCTTCTTAGCTACCACCGGTTCACAAATCAAGAATTTTTATCCTTTAAATACCCCTCACCTACATATCCATCAATACAACTTTCTTACTAATTAGGGACATTTTGGTCATTTGCCTTTCTCCTTAATTTCATCTTGGGAAGCTAGGGTTTGAAATTTTGTGGGACGGAGGGAGTA

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