SE2610411

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7379
  • Oryza sativa
  • SE2610411
  • Tc1/Mariner
  • St39
  • Chr04:28264925-28265170
  • TA
  • TACTCCCTCC

Secondary structure and sequence

TSD    TIR
5'



3' 
          ATAAAAAA     - AAT C    TAGCATCTTAAGACAAAAATAGTGGAGATGAAAAATGACTAAAATATTCTTAATCATTAAAAAAAGTAATAAGAGTGATAGCTAAGTAAAGGGT
TACTCCCTCC        AATGC C   C TAGC                                                                                              
||||||||||        ||||| |   | ||||                                                                                               
ATGAGGGAGG        GTTTT T   T TGAG                                                                                              
          -----CAG     T --- -    TTGAAGATCTCAAACTTAAAACAGTATGTTTTTTGGTTGAAGATGGTAGGATGGATAGGAGTCGTGCATTTTACTCTTCAAAACAGGGAAGTTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3