SE2610412

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7380
  • Oryza sativa
  • SE2610412
  • Tc1/Mariner
  • St39
  • Chr03:9522412-9522659
  • TA
  • TACTCCCTCTGTC

Secondary structure and sequence

TSD    TIR
5'



3' 
             -    A --     AATATTCCTAGA  CCCGAGGTGAAATTAGTGGAGATGGGGAATGACTAAAATGCCCATAATCATTGAAAAAAGTAGTAAGAGTGATAGGTAGATAAGAGGTATT
TACTCCCTCTGTC CCCA A  AAAAA            AT                                                                                           
||||||||||||| |||| |  |||||            ||                                                                                            
ATGAGGGAGGTAG ATTT T  TTTGA            GT                                                                                           
             A    - TT     ------------  TAAAGATACTCAAATTTAAAATAGGGTGTTTTTTAGTTGAAGATTGTAATATGGATGGGAGCCGTGTATTTTGCTTTTCAAAATAGGGACG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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