SE2610413

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7381
  • Oryza sativa
  • SE2610413
  • Tc1/Mariner
  • St39
  • Chr02:5370823-5371065
  • TA
  • TACTCTCTCCGTCC

Secondary structure and sequence

TSD    TIR
5'



3' 
         C    -AAAA   C    C    ------    TT  AATTTTGTCCAAAAAAAAACCAACTTCTACCATTCTACCTACTCCCAGCAAGTAAAATGAGAAGTTTTATTCCTTCAACA
TACTCTCTC GTCC     AAA TCAA TTCT      GGAG  TG                                                                                
||||||||| ||||     ||| |||| ||||      ||||  ||                                                                                 
ATGAGGGAG CAGG     TTT AGTT AGGA      GGTT  AC                                                                                
         A    GAATA   T    T    TCGTAG    --  ATTGTAATCACCTCTCACTTTTACTGGTTTTATGGAGAATAATAATTTTTTTTATCATTACTACTATACATCCATTTCTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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