Plant MITE

SE2610414

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_7382
Oryza sativa
SE2610414
Tc1/Mariner
St39
Chr06:23178198-23178437
TA
TACTCCCTCCGT

Secondary structure and sequence

TSD TIR

5'

3'

            AAAAAAAAAAA   ATT    --    TCCA   - ------ AAATTAGTAAAGAATGAAAATGACAAATGCCTCATTATTGAAAAAAGTAGTAATGGTGATAGGTAGATAAAGGGTA
TACTCCCTCCGT           ACC   CCTA  TCAT    AGG T      A                                                                            
||||||||||||           |||   ||||  ||||    ||| |      |                                                                            T
ATGAGGGAGGCA           TTT   TTTG  TTGA    AGA G      T                                                                            
            -------GGGA   ---    AG    ----   C ACAAAC TAAAACAGGGTGATTTTCGGTTGAAAATGGTAGCATGGATGAGAGTCATGTATTTAGCTCTTCAAAATAGGAAAGT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2610414

TACTCCCTCCGTAAAAAAAAAAAACCATTCCTATCATTCCAAGGTAAAATTAGTAAAGAATGAAAATGACAAATGCCTCATTATTGAAAAAAGTAGTAATGGTGATAGGTAGATAAAGGGTATTGAAAGGATAAAACTTCTCGATTTATGTACTGAGAGTAGGTACGATGGTAAAAGTTGGCTTTTAGTGGGACAAAATTCAAACAGCAGAAGTTGAGTTTTTTAGGGACGGAGGGAGTA

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