SE2610415

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7383
  • Oryza sativa
  • SE2610415
  • Tc1/Mariner
  • St4
  • Chr07:13179281-13179543
  • TA
  • TACTCCCTCCGTACGCATAAAGGAAGTCGTTTAGGA

Secondary structure and sequence

TSD    TIR
5'



3' 
              G                     CAGC   ACGGTCTCCAAAACACAACTTTAACTTCTTGTTTCTATAAAAATATTTATTGAAAAGTGATATATGTATAGTTTTATGAAAGTATTTTTC
TACTCCCTCCGTAC CATAAAGGAAGTCGTTTAGGA    GAC                                                                                          
|||||||||||||| |||||||||||||||||||||    |||                                                                                           
ATGAGGGAGGCATG GTATTTCCTTCAGTAAATCCT    TTA                                                                                          
              A                     ---A   TAAATTCAGTTTGGAACTTTTATATTTAGTATTTATTGAGAGTTCAACAACTCAAACTTTTACATTTTTAATATACTTATCTAAACAGAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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