Plant MITE

SE2610416

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_7384
Oryza sativa
SE2610416
Tc1/Mariner
St40
Chr04:33269785-33270112
TA
TACTCCCTCCGTCCCATAAAAATTGCATTTCTAGCT

Secondary structure and sequence

TSD TIR

5'

3'

    C                               -------------------CTAA  CTTT   -     AAAATTGTATTTCTAGCCATGTGGGACCCAACCAATTGATTCATATGTATAAGTTTCCTTTCATCCCACATAATTTGGGCTGCTAATGCTTGCAATTTTATT
TACT CCTCCGTCCCATAAAAATTGCATTTCTAGCT                       GG    GTC CCACA                                                                                                      
|||| |||||||||||||||||||||||||||||||                       ||    ||| |||||                                                                                                       
ATGA GGAGGCAGGGTATTTTTAACGTAAAGATCGA                       AC    CTT TACTG                                                                                                      
    T                               TTAAATCCTGTTTTATCATCCTA  ----   T     TTGTTATTAGATTAAATTACTTGGGTGACGTACGTGTGTAAGGTATATATATTTACTAATTTTCCTTCAAACTCTCTTAATTGGGTATATTAATCGTATGAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2610416

TACTCCCTCCGTCCCATAAAAATTGCATTTCTAGCTCTAAGGCTTTGTCCCACAAAAATTGTATTTCTAGCCATGTGGGACCCAACCAATTGATTCATATGTATAAGTTTCCTTTCATCCCACATAATTTGGGCTGCTAATGCTTGCAATTTTATTAAGTATGCTAATTATATGGGTTAATTCTCTCAAACTTCCTTTTAATCATTTATATATATGGAATGTGTGCATGCAGTGGGTTCATTAAATTAGATTATTGTTGTCATTTTCCAATCCTACTATTTTGTCCTAAATTAGCTAGAAATGCAATTTTTATGGGACGGAGGTAGTA

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