Plant MITE

SE2610417

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_7385
Oryza sativa
SE2610417
Tc1/Mariner
St40
Chr12:8360057-8360344
TA
TACTACCTCCGTCCCATAAAAATTGAATTTTTACCATTGA

Secondary structure and sequence

TSD TIR

5'

3'

                                 --CC     ------------------ATCTTT        AAAATT   TTTCTACTGATATGGGACCCATTAAACTGATTGCATTTCCTTGTAATCTTCTTTCCTTCCATCCCATCTCTA
TACTACCTCCGTCCCATAAAAATTGAATTTTTA    ATTGA                        GTCCCATA      GTA                                                                        
|||||||||||||||||||||||||||||||||    |||||                        ||||||||      |||                                                                         
ATGATGGAGGCAGGGTATTTTTAACTTAAAGAT    TAATT                        ACTGATGT      GGA                                                                        
                                 TCCT     CCTGTATAATCCTCCTGTCTGTTT        --TATT   ACAAATTACTTGTGTTATGTACGTGTGTAAGGTATATATTTGAACTAATTTTCCTTACAACTCTGTTACCCA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2610417

TACTACCTCCGTCCCATAAAAATTGAATTTTTACCATTGAATCTTTGTCCCATAAAAATTGTATTTCTACTGATATGGGACCCATTAAACTGATTGCATTTCCTTGTAATCTTCTTTCCTTCCATCCCATCTCTAACCCATTGTCTCAACATTCCTTTTAATCAAGTTTATATATGGAATGTGTGCATGTATTGTGTTCATTAAACAAGGTTATTGTAGTCATTTGTCTGTCCTCCTAATATGTCCTTAATTCCTTAGAAATTCAATTTTTATGGGACGGAGGTAGTA

Copy Cancel