SE2610418

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7386
  • Oryza sativa
  • SE2610418
  • Tc1/Mariner
  • St41
  • Chr07:6115411-6115648
  • TA
  • TACTCCCTCCATTTCAAAATGCAGGATGTCATTGACTTTTTACACGATGTTTGACCATTCGTCTTATTTTAA

Secondary structure and sequence

TSD    TIR
5'



3' 
    C         CAA    CAG      A          A     T      C    C        TT  A     ATATAAATTTAATTTATTTTGTTACCACTTGTTTTATCATC
TACT CCTCCATTT   AATG   GATGTC TTGACTTTTT CACGA GTTTGA CATT GTCTTATT  AA AAAAT                                         
|||| |||||||||   ||||   |||||| |||||||||| ||||| |||||| |||| ||||||||  || |||||                                         A
ATGA GGAGGTAAA   TTAT   CTGCGG AACTGAAAAG GTGTT CAAACT GTAA CAGAGTAA  TT TAAGT                                         
    T         ATC    ATA      C          C     T      A    A        TT  -     CATACTTATACATTTTGATATCCAATTATAATATAAAATAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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