SE2610419

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7387
  • Oryza sativa
  • SE2610419
  • Tc1/Mariner
  • St41
  • Chr08:5072708-5072944
  • TA
  • CATCCCAAAATGTATAACG

Secondary structure and sequence

TSD    TIR
5'



3' 
TACTCCCTT     ----          A   CTAGC  C       -   A   CG                   AAA         AATA    TTATTGTTGTGACCTATTTTATCATCAAAGA
         CATCC    CAAAATGTAT ACG     TG TGACTTT TTC TAA  TTTAACTATTCATTTTATT   GAAAATATA    TCAT                               
         |||||    |||||||||| |||     || ||||||| ||| |||  |||||||||||||||||||   |||||||||    ||||                               A
         GTAGG    GTTTTACATA TGC     GC ACTGAAA GAG ATT  AAATTGGTAAGTAAAGTAG   CTTTTATAT    ATAT                               
    ATAAT     TAAA          C   ----A  A       A   C   AA                   --A         ---C    TTATATATTTTCATATTTGATTCTAATATCA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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