Plant MITE

SE2610420

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_7388
Oryza sativa
SE2610420
Tc1/Mariner
St41
Chr02:32656127-32656361
TA
TACTCCTTTATTTCAAAATATATGATATTATTGATTTTTCACATAACGTTTGACCATTCATCTGATTAAAAATATATATAAATAT

Secondary structure and sequence

TSD TIR

5'

3'

    -     A         A        T         T  C                CA   G        --TAT      A   --TATTTATTTT    -TAACTTA      CAT
TACT CCTTT TTTCAAAAT TATGATAT ATTGATTTT CA ATAACGTTTGACCATT  TCT ATTAAAAA     ATATAA TAT            GTTG        TTTTAT   
|||| ||||| ||||||||| |||||||| ||||||||| || ||||||||||||||||  ||| ||||||||     |||||| |||            ||||        ||||||    
ATGA GGAAG AAAGTTTTA ATACTATG TAACTGAAA GT TGTTGCAAATTGGTAA  AGA TAATTTTT     TATATT ATA            CAAT        AAAATA   
    T     A         C        -         C  A                AC   G        TAAAT      C   CATTTTCATATT    TCTAATAC      AAC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2610420

TACTCCTTTATTTCAAAATATATGATATTATTGATTTTTCACATAACGTTTGACCATTCATCTGATTAAAAATATATATAAATATTATTTATTTTGTTGTAACTTATTTTATCATCAAATAAAACATAATCTTAACTTATACTTTTACATACTTATATTAAATTTTTTAATGAGACAAATGGTTAAACGTTGTATGCAAAGTCAATGTATCATACATTTTGAAAAGAAGGTAGTA

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