Plant MITE

SE2610421

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_7389
Oryza sativa
SE2610421
Tc1/Mariner
St42
Chr02:2794799-2794960
TA
TACTTCCTCTGTTTCACATTATAAGATGTTTTTGGTTTTTGAATAGATTCAT

Secondary structure and sequence

TSD TIR

5'

3'

      C   G     C               T       --------GAA         GCAT G         ----  T  TTCG
TACTTC TCT TTTCA ATTATAAGATGTTTT GGTTTTT           TAGATTCAT    G ATCCATGTA    TG GC    
|||||| ||| ||||| ||||||||||||||| |||||||           |||||||||    | |||||||||    || ||    T
ATGAGG AGG AAAGT TAATATTCTGCAAAA CCAAAGA           GTCTAAGTG    C TAGGTATAT    AC TG    
      T   G     A               -       GGTAGGAGCAG         --AT G         TTAA  T  TGTA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2610421

TACTTCCTCTGTTTCACATTATAAGATGTTTTTGGTTTTTGAATAGATTCATGCATGGATCCATGTATGTGCTTCGTATGTGTTCAAATTTATATGGATGCTAGTGAATCTGGACGAGGATGGAGAAACCAAAACGTCTTATAATATGAAAGGGATGGAGTA

Copy Cancel