Plant MITE

SE2610422

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_7390
Oryza sativa
SE2610422
Tc1/Mariner
St42
Chr01:21195689-21195849
TA
TACTTCCTCTGTTTCACATTATAAGACATTTTGTTTTCT

Secondary structure and sequence

TSD TIR

5'

3'

              C            A     T     AATAG    -A  CA         ATATGT  -           CT
TACTTCCTCTGTTT ACATTATAAGAC TTTTG TTTCT     ATTT  TG  TGGATTCAT      AC TTCATATGTGT  
|||||||||||||| |||||||||||| ||||| |||||     ||||  ||  |||||||||      || |||||||||||   
ATGAGGGAGACAAG TGTAATATTCTG AAAAC GGAGA     TAAG  GC  ATCTAAGTG      TG AGGTATACGTA  
              A            C     C     ---GG    AA  AG         ----AT  T           AA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2610422

TACTTCCTCTGTTTCACATTATAAGACATTTTGTTTTCTAATAGATTTATGCATGGATTCATATATGTACTTCATATGTGTCTAAATGCATATGGATGTTAGTGAATCTAGACGAAGAATGGAGAGGCCAAAACGTCTTATAATGTAGAACAGAGGGAGTA

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