Plant MITE

SE2610423

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_7391
Oryza sativa
SE2610423
Tc1/Mariner
St43
Chr08:7099644-7099875
TA
TACTCCCTCCGTCCCAAAAAAAGGCAAACTCTGGGTTTCCGTGTCCAACGTTTGACTGTCCGTCTTATATGAAA

Secondary structure and sequence

TSD TIR

5'

3'

                     ---         C       C                             A     -TTTTTTTATAATT   AT    -     TGTTAGATAATAA
TACTCCCTCCGTCCCAAAAAA   AGGCAAACT TGGGTTT CGTGTCCAACGTTTGACTGTCCGTCTTAT TGAAA              AGT  TTTT ATTAT             
|||||||||||||||||||||   ||||||||| ||||||| ||||||||||||||||||||||||||||| |||||              |||  |||| |||||             A
ATGAGGGAGGCAGGGTTTTTT   TCTGTTTGG ACCCAAA GCACAGGTTGCAAACTGGCAGGCAGAATA ACTTT              TCA  GTGC TAATT             
                     TTT         T       T                             A     TTTAATTTTTCTGT   --    G     CATAATTAGTACA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2610423

TACTCCCTCCGTCCCAAAAAAAGGCAAACTCTGGGTTTCCGTGTCCAACGTTTGACTGTCCGTCTTATATGAAATTTTTTTATAATTAGTATTTTTATTATTGTTAGATAATAAAACATGATTAATACTTAATGCGTGACTTGTCTTTTTAATTTTTTCAAATAAGACGGACGGTCAAACGTTGGACACGTAAACCCATGGTTTGTCTTTTTTTTTTGGGACGGAGGGAGTA

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