Plant MITE

SE2610424

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_7392
Oryza sativa
SE2610424
Tc1/Mariner
St43
Chr10:2695303-2695541
TA
TACTACCTCCGTCCCAAAATAAGTGCAGCCATGGTTTTCAGCGCCCAACTTTGACCATTCGTCTTATTTAAAATTTTTTT

Secondary structure and sequence

TSD TIR

5'

3'

                                 -      A                A     C      AA         GAAAAAAATTAAA   ATAAGTTACGAGTAAAGTACTATCCAT
TACTACCTCCGTCCCAAAATAAGTGCAGCCATG GTTTTC GCGCCCAACTTTGACC TTCGT TTATTT  AATTTTTTT             GAC                           
||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| ||||| ||||||  |||||||||             |||                            
ATGATGGAGGCAGGGTTTTATTCACGTCGGTAT CAAAGG CGCGGGTTGAAACTGG AGGCA AATAAA  TTAAAAAAA             TCG                           
                                 T      -                C     A      -C         ------ATATTAA   TGAAAACAACAATATTCTACTATTTTG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2610424

TACTACCTCCGTCCCAAAATAAGTGCAGCCATGGTTTTCAGCGCCCAACTTTGACCATTCGTCTTATTTAAAATTTTTTTGAAAAAAATTAAAGACATAAGTTACGAGTAAAGTACTATCCATGTTTTATCATCTTATAACAACAAAAGTGCTAATTATAAAAAAAATTCAAATAAAACGGACGGTCAAAGTTGGGCGCGGAAACTTATGGCTGCACTTATTTTGGGACGGAGGTAGTA

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