SE2610425

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7393
  • Oryza sativa
  • SE2610425
  • Tc1/Mariner
  • St43
  • Chr04:28365426-28365667
  • TA
  • CCTCCGTCTCAAAATAAGTGCAGT

Secondary structure and sequence

TSD    TIR
5'



3' 
TACTA         C          C   CGGGA  --A  -   GCC              C          A   --AAA      AAATTTT   AATATTTAGTCACACATAAAGTACTATTC
     CCTCCGTCT AAAATAAGTG AGT     AT   TC CGT   CAATGTTTAACCGT CGTCTTATTT AAA     TTATGA       TAA                             
     ||||||||| |||||||||| |||     ||   || |||   |||||||||||||| |||||||||| |||     ||||||       |||                             A
     GGAGGCAGG TTTTATTCAC TCA     TG   AG GCA   GTTGCAAATTGGCA GCAGAATAAA TTT     AATACT       ATC                             
ATAAG         A          A   AAATG  ATA  T   --A              A          C   AAAAA      ------A   ATAAAAATAACGATAATCTACTATTTTGT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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