Plant MITE

SE2610427

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_7395
Oryza sativa
SE2610427
Tc1/Mariner
St44
Chr03:28703400-28703631
TA
TACTCCCTCCGTCCCAAAATATAACAACTTTTAG

Secondary structure and sequence

TSD TIR

5'

3'

                A       C  C      CCCTC  GATTTGTCCCAAAATATAACAACTTCTCCACCAACATTCTCTTCCCAACCAATCACAACCCTCCACCATTCACTTTT
TACTCCCTCCGTCCCA AATATAA AA TTTTAG     AG                                                                             
|||||||||||||||| ||||||| || ||||||     ||                                                                              
ATGAGGGAGGCAGGGT TTATATT TT AAAATC     CA                                                                             
                A       C  C      ----T  ATCTGTGCCAATAATTCTTTCATCCATCTTTACTTACCACCTCCCAACGCTAACCTACTCATCACCTCCATCCACCC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2610427

TACTCCCTCCGTCCCAAAATATAACAACTTTTAGCCCTCAGGATTTGTCCCAAAATATAACAACTTCTCCACCAACATTCTCTTCCCAACCAATCACAACCCTCCACCATTCACTTTTCCCACCTACCTCCACTACTCATCCAATCGCAACCCTCCACCATTCATTTCTACCTACTTTCTTAATAACCGTGTCTAACTCTAAAACTTCTTATATTATGGGACGGAGGGAGTA

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