SE2610429

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7397
  • Oryza sativa
  • SE2610429
  • Tc1/Mariner
  • St5
  • Chr02:26939305-26939619
  • TA
  • TACTCCCTCTATTCCAAATTGATCTACATAT

Secondary structure and sequence

TSD    TIR
5'



3' 
                               ----TTCATA   ACACTAAGACCAAGAAAAGCTAATAACTCTCTCATACTATATTTACTCTAGCAACAAACTCAATGCATGCACCATCCCATTATTTCCTAGCCAACAGCAAATCAAGATATTGCAT
TACTCCCTCTATTCCAAATTGATCTACATAT          GGT                                                                                                                   
|||||||||||||||||||||||||||||||          |||                                                                                                                   G
ATGAGGGAGGTAAGGTTTAACTAGATGTATA          TCT                                                                                                                   
                               TTAAAAAAAC   AATAAGGATTTACTAGATGTATAAACACAAGTAAGTAATTCAGATAAGCAATAAACACGTAACCTCATTTACCTGTAACTACGTACGTAGGTACGTGTGTTCATAAATATTGGGT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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