Plant MITE

SE2610430

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_7398
Oryza sativa
SE2610430
Tc1/Mariner
St6
Chr02:2148021-2148283
TA
TACTCCCTCCGGTTCCATATTAATTGACGTTTTGGACAA

Secondary structure and sequence

TSD TIR

5'

3'

              C   A                    ----------G       -  AAACTTTTATAACTTAGACTATCAATAACTTTAAAAATATTTAGTTTAAAGGAACTAGAACAACATATATAGATTTG
TACTCCCTCCGGTT CAT TTAATTGACGTTTTGGACAA           GTTGAGG TC                                                                             
|||||||||||||| ||| ||||||||||||||||||||           ||||||| ||                                                                              
ATGAGGGAGGCCAA GTA AATTAACTGCAAAACCTGTT           TGTTCTA GT                                                                             
              A   A                    ACTGTACCATA       T  AGAAACTGGAATAAAAAGATAATATTATATATATTATTTATTTACGTACAAATGAAAATAATATCATGAAATTTTCT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2610430

TACTCCCTCCGGTTCCATATTAATTGACGTTTTGGACAAGGTTGAGGTCAAACTTTTATAACTTAGACTATCAATAACTTTAAAAATATTTAGTTTAAAGGAACTAGAACAACATATATAGATTTGTCTTTTAAAGTACTATAATAAAAGTAAACATGCATTTATTTATTATATATATTATAATAGAAAAATAAGGTCAAAGATGTATCTTGTATACCATGTCATTGTCCAAAACGTCAATTAAAATGAAACCGGAGGGAGTA

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