Plant MITE

SE2610431

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_7399
Oryza sativa
SE2610431
Tc1/Mariner
St7
Chr01:40394580-40394842
TA
TACTCCCTCCATCCACAAAAGTTACACCTATTTCACATTTGA

Secondary structure and sequence

TSD TIR

5'

3'

                           C    TC  A     GTTTTTC      A TTGTTCCTATTTGTAGTCTTTATACGTTCAAGACTTGAATGAAGAGATAAATTAAATGTTTTATTAGAATCCAAGAAG
TACTCCCTCCATCCACAAAAGTTACAC TATT  AC TTTGA       CAAATA G                                                                              
||||||||||||||||||||||||||| ||||  || |||||       |||||| |                                                                              T
ATGAGGGAGGTAGGTGTTTTCAATGTG ATAA  TG AAACT       GGTTCT G                                                                              
                           T    --  A     -----GT      - ATTTTTCTTTAATTTAGTGGAACCTACAATGTTTTAGTTCCTCATTTACGTTCGTACGTTGGTTACTCATAAATCTAC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2610431

TACTCCCTCCATCCACAAAAGTTACACCTATTTCACATTTGAGTTTTTCCAAATAAGTTGTTCCTATTTGTAGTCTTTATACGTTCAAGACTTGAATGAAGAGATAAATTAAATGTTTTATTAGAATCCAAGAAGTCATCTAAATACTCATTGGTTGCATGCTTGCATTTACTCCTTGATTTTGTAACATCCAAGGTGATTTAATTTCTTTTTAGTCTTGGTGTCAAAAGTAATATGTGTAACTTTTGTGGATGGAGGGAGTA

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