SE2610432

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7400
  • Oryza sativa
  • SE2610432
  • Tc1/Mariner
  • St8
  • Chr05:23604867-23605153
  • TA
  • TACTACCTCCATCCCATAATAATTACATTTCTA

Secondary structure and sequence

TSD    TIR
5'



3' 
              C  A               GAAAATTAGAGACAAATTAACAACAAACACAATTTACCA    AAC   ------   TAA -  C     TGCATACGTATATTCCATATGTATACTTGATTAATAGGAAGGTTGAGGAACACATTCCATATGTAA
TACTACCTCCATCC AT ATAATTACATTTCTA                                       CAAT   CCT      ATT   T AA TATGC                                                                  
|||||||||||||| || |||||||||||||||                                       ||||   |||      |||   | || |||||                                                                   
ATGATGGAGGTAGG TA TATTAATGTAAAGAT                                       GGTA   AAT      CAG   G TT TTTAT                                                                  
              A  A               ---------------------------------------    ---   TTAAAA   --- A  -     AACATAAAGACTATTCTACCCTGCGTTGTTTACCTTACACATGGGTTTGGAAAGAAAATTAATTCA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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