SE2610433

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7401
  • Oryza sativa
  • SE2610433
  • Tc1/Mariner
  • St9
  • Chr10:16114139-16114402
  • TA
  • TACTCCCTCCGGGCTGATAATACTTGTCGTTTTGAACCAGGGTGAAGTC

Secondary structure and sequence

TSD    TIR
5'



3' 
             C                    A  C      AA   AAACT   GA        TTATGAATTATTTTTAAAATATTTATCTTTCAAATATGGTGACTACATGTATAGATTAGTCTTAAAA
TACTCCCTCCGGG TGATAATACTTGTCGTTTTG AC AGGGTG  GTC     TTA  ATATTTGA                                                                   
||||||||||||| |||||||||||||||||||| || ||||||  |||     |||  ||||||||                                                                    
ATGAGGGAGGCCC ACTATTATGAACAGCAAAAC TG TCCCGT  CAG     TTT  TTTGTTGA                                                                   
             A                    C  T      GC   --AAG   --        AACTGTTAATAAAAAGTAATATTATACATATTTTAACAATCGTTTATATACTAGAATAATTTCATGA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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