Plant MITE

SE2620435

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_7403
Oryza sativa
SE2620435
Mutator
M102
Chr02:28769656-28770199
GGGTTCACA
GGGTTCACATCCCCTGCCTTTGGGCATAACGGCAAACTTTGCCGTTCCTCCATCCCAAACGTCCATTTCATATTTACGGCTGGATTTTGCTGGCCCAA

Secondary structure and sequence

TSD TIR

5'

3'

      A                                           -C   C   A  T                 C             ----     CATACATCA      AAATTGCTTTCTTCTCAAACGAAAGACATCGTCATGGTTGTGGCCCACTATAGTTTCATTTTGTTGCATGACCATCACGAATAGCTAATAGTAGCAATCTAGCACCTACAACTTCAAGATTTTGCAACTTCAAGATTTATTATCCACAATACAGATCATT
GGGTTC CATCCCCTGCCTTTGGGCATAACGGCAAACTTTGCCGTTCCTC  ATC CAA CG CCATTTCATATTTACGG TGGATTTTGCTGG    CCCAA         CCTCAA                                                                                                                                                                
|||||| |||||||||||||||||||||||||||||||||||||||||||  ||| ||| || ||||||||||||||||| |||||||||||||    |||||         ||||||                                                                                                                                                                 
CCCAAG GTAGGGGACGGAAACCCGTGTTGCCGTTTGAAACGGCAAGGAG  TAG GTT GC GGTAAGGTATAAATGCT GCCTAAAACGATC    GGGTT         TTCTTT                                                                                                                                                                
      C                                           TT   T   C  T                 A             TGAA     -------AA      AACGAAAAGAGGTTGCATTGCATTGTATTACGGAAAGGTTAATTCTTTGACGAAAAGAAGAGGTTACGTTATGTAGCAAACTAATTTGCGAACGACAAAGGAAAACTATAGTATGAGTACGACAAGTAAACAAGGTACAGGTGACCCTTTTTCTTAGGGA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2620435

GGGTTCACATCCCCTGCCTTTGGGCATAACGGCAAACTTTGCCGTTCCTCCATCCCAAACGTCCATTTCATATTTACGGCTGGATTTTGCTGGCCCAACATACATCACCTCAAAAATTGCTTTCTTCTCAAACGAAAGACATCGTCATGGTTGTGGCCCACTATAGTTTCATTTTGTTGCATGACCATCACGAATAGCTAATAGTAGCAATCTAGCACCTACAACTTCAAGATTTTGCAACTTCAAGATTTATTATCCACAATACAGATCATTAGGGATTCTTTTTCCCAGTGGACATGGAACAAATGAACAGCATGAGTATGATATCAAAAGGAAACAGCAAGCGTTTAATCAAACGATGTATTGCATTGGAGAAGAAAAGCAGTTTCTTAATTGGAAAGGCATTATGTTACGTTACGTTGGAGAAAAGCAATTTCTTAATTGGGAAGTCTAGCAAAATCCGATCGTAAATATGGAATGGTCGCTTGTGATTTGAGGAACGGCAAAGTTTGCCGTTGTGCCCAAAGGCAGGGGATGCGAACCC

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