SE2610436

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7404
  • Oryza sativa
  • SE2610436
  • Tc1/Mariner
  • St46
  • Chr07:3175548-3175909
  • N.A.
  • CTCCCTCCGT

Secondary structure and sequence

TSD    TIR
5'



3' 
   C      ---------     -   GAT -    TATTGAAAAAAATGATAATTCCATTTTGATATTCGCATTACGGTGGAGAGGCGATGAAAATCCTGTGAAGGACGTTAATGACACTTCCTAACGAACACTGCATGCATCTGATTGGTCAGGCTATGCGGCATGCAAAACTAATTAGGAGCCG
CTC CTCCGT         TCCCT TTT   C ATCG                                                                                                                                                       
||| ||||||         ||||| |||   | ||||                                                                                                                                                        
GAG GAGGTA         TAGAA TAT   A ACTA                                                                                                                                                       
   A      AAGATTAAC     G   --- T    AACACGTAGTTATGGTTCTGTTAGGACGCCTCGTGAATTAGTCGTAGCTTTTGTACGTAATCGCAAAGCATAGGCACTTACATCGCGGTAGTTAAAACGTATGACATAACGACCGGTTAGTCAACACTCGCATAATTTAGGTACGTACGTC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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