SE2620437

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7405
  • Oryza sativa
  • SE2620437
  • Mutator
  • M103
  • Chr02:28447508-28447775
  • AATTCGGAT
  • ATTCGGATCCTCTACTGTAGAGG

Secondary structure and sequence

TSD    TIR
5'



3' 
  A             A -----        AGAAATT  A  G  AG T    -   ---  GGCATTAGGAGTACTGTGAAGCGTCCGATAGAAGATGGATGGATCAGATGAGATGCTACAGTAAATCTGCTACAGCACTA
   ATTCGGATCCTCT C     TGTAGAGG       TC GA GT  C ACAG TGC   CC                                                                                
   ||||||||||||| |     ||||||||       || || ||  | |||| |||   ||                                                                                A
   TAAGCCTAGGAGA G     ACATCTCC       GA TA TC  G ATGT ATT   CA                                                                                
GCC             C TCATT        ---CAGT  -  -  -- -    G   ATA  CTCCCCTTGTCACAAGATTACGTGTGGTGTCAGTGCTAAATGACATCGATGTCCCCTACTTACATGACATCGTGGAGACC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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