SE2620438

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7406
  • Oryza sativa
  • SE2620438
  • Mutator
  • M104
  • Chr11:14252342-14252742
  • GGATCGGCT
  • GGATCGGCTATAATTATGACGACAGATTTTTCCCACAAACGCAGTC

Secondary structure and sequence

TSD    TIR
5'



3' 
     C       A     A  A  G       CC     -CGC    ---    TTTCAGCCTTAGGATTGGCATGAAGATTCGTGCTCATGGGGCATCAGCACACACGCTTTGCTATGATTGGTTCTGACACGGCGTAGATGCATACTGATATGCTTTTTAAACTTTGTTGTTGTTGTAAATTATATATTTATATAAATTTA
 GGAT GGCTATA TTATG CG CA ATTTTTC  ACAAA    AGTC   GAAT                                                                                                                                                     
 |||| ||||||| ||||| || || |||||||  |||||    ||||   ||||                                                                                                                                                      
 CCTG TCGATAT AATAC GC GT TAAAAAG  TGTTT    TCAG   TACA                                                                                                                                                     
C    A       A     C  G  A       --     TATA    CCA    CAAATGTAACATTCAGTGATTTAATGTATACATTAAAATCACATAAATGCTACATTCGGGGTTTTAATGTATACATTCATAATTTTAATGTATACATTTAGGATTTTAATGTATACATTTATCACACAATCACTACACATTGATGATAC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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