SE2620439

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7407
  • Oryza sativa
  • SE2620439
  • Mutator
  • M104
  • Chr08:6216671-6217090
  • CGGACATGC
  • GGACATGCTATATTTATGGCGACATAAAATTAGCTTGA

Secondary structure and sequence

TSD    TIR
5'



3'
C   CAT               A    AAA  AG T   -TCAC       TAATCTGA    TGGATATCATGTAGATTCATGTTGCACTGTTAATGATTGACTTAACGAACGTTTGATTTGCTAAGTCTGTAGTTATTTGATCTCTCTGTACTACGAACATGTTGCTCCTGTTATACATTAGTTTCCCATTGAATTTGCACTAGCATCTCTTC
 GGA   GCTATATTTATGGCG CATA   TT  C TGA     AGTCGGT        CCCT                                                                                                                                                        
 |||   ||||||||||||||| ||||   ||  | |||     |||||||        ||||                                                                                                                                                        T
 CCT   CGATATAAATACCGC GTAT   AA  G ATT     TCAGCCG        TACG                                                                                                                                                        
C   CAT               G    --A  AA T   TTTTA       --------    TAAATGTAACATTCAGGGATTTAATGTATACATTAAAATCACATAAATGTTACATTCAAGATTTTAATGTATACATTCAATATTTTAATGTATACATCAAAATCACATAAATGGTACACTTAACGTTTAATGTATACATTCATCTATATTTA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End