SE2620440

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7408
  • Oryza sativa
  • SE2620440
  • Mutator
  • M104
  • Chr01:574809-575331
  • GAGAGTAGC
  • GCTATATTTATGGCGCCATATTTTT

Secondary structure and sequence

TSD    TIR
5'



3' 
GAGAGTA       T        C        --CACT            --G    TTTTTATATTGTAAGTCTCTAAATTACATATGTAATTTTATTGTATAGAGTATGTAAGTCCCAAAATTATATATGTAAGTGTCTAAATTACATATGTAATTTCAGTGTATTTAGGATGTAAGTACAAAAATTACATATGTAAGTGTCTAAATTACATATATAATTTTAATATGTTTAGGATGTAATCACGATAAAAAGAAGAGGGAA
       GCTATAT TATGGCGC ATATTTTT      AAAAAATAGTCG   TATG                                                                                                                                                                                                               
       ||||||| |||||||| ||||||||      ||||||||||||   ||||                                                                                                                                                                                                                
       CGATATA ATACCGTG TATAAAAA      TTTTTTGTCAGC   AGGA                                                                                                                                                                                                               
GCCATAA       T        -        AATTCT            AAA    CCGCCATCCTAGAGGGAACTAAAAGTACTAAAAGTACTAATCGAAGGGTGCGACTAACGGCTAAAAACAGCTCCACATATAGTTCCTACTGAACTACTGAACTAATGAAACAATAATTATGAGTTTCCCTGTACACTAAAACACTCATTAATAAAAGATGAAACGATCGAAGAAAGAAAAGAGGTTTGCCTGTACACTAAACACTCG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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