SE2620441

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7409
  • Oryza sativa
  • SE2620441
  • Mutator
  • M105
  • Chr08:4584430-4584952
  • GGAACCGTA
  • GGAACCGTATCCTCTGACATTACACAGCAATGTCACCGCGTGACATTCCTTCGATCCACACCATCCATTCTAAATCAACGGCCACAGACTAATTGGCATCTAACTAATCAAAATAACTAGCAGATCATGTAG

Secondary structure and sequence

TSD    TIR
5'



3'
                     -      C     C  C C                              C             AC   C  A       C   C        A   C   C    CA     GTATA   A    ATA    GG - G  TTTTTTTTTGTTAGCACTAAAGCAGTCTCTTCATCTTTGAAGATTCAGAATTGCCCCGTTTTGACGGAGGATGGCAGCACAAAATTGATGCACAGGGATTCACTTC
GGAACCGTATCCTCTGACATT ACACAG AATGT AC G GTGACATTCCTTCGATCCACACCATCCATT TAAATCAACGGCC  AGA TA TTGGCAT TAA TAATCAAA TAA TAG AGAT  TGTAG     TGT CTTA   GGTG  A A GA                                                                                                          
||||||||||||||||||||| |||||| ||||| || | |||||||||||||||||||||||||||||| |||||||||||||  ||| || ||||||| ||| |||||||| ||| ||| ||||  |||||     ||| ||||   ||||  | | ||                                                                                                           
CCTTGGTATAGGAGACTGTAA TGTGTC TTACA TG C CACTGTAAGGAAGTTAGGTGTGGTAGGTAA ATTTAGTTGCCGG  TCT AT AACTGTA GTT GTTGGTTT ATT ATC TCTA  ACATC     ACA GGAT   AGTC  T T AA                                                                                                          
                     A      A     A  C A                              T             CA   A  A       C   A        G   A   A    AC     -----   G    -CT    -- A -  CGTAAAAGTTCTCCGTTTGTAGCAACTGGCTACCTTCTTAGCTGTATACTACTATTAATACAAAGTGAATGAACAATCTACATCGCTAATCGTGTAATAGGACCTC

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End