Plant MITE

SE2630442

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_7410
Oryza sativa
SE2630442
hAT
Hat25
Chr03:10113302-10113675
CAGTGGCG
CAGTGGCGGATCCACTGT

Secondary structure and sequence

TSD TIR

5'

3'

           C  --C   ---------------------------------------T     T  --  -  T  GCCAGACCCAGCTCTAATCCCTGCCCCTAATTAATCATTAACAAGTCTAGTTAGTCATTACTGAAGAAAATTCCCAGACGGCAAAGATGCAGGCTTCCTCCCTGCTTCTACTGTCCAAACTGGTAAAATAG
CAGTGGCGGAT CA   TGT                                        GGGGC GG  TT GG GC                                                                                                                                   
||||||||||| ||   |||                                        ||||| ||  || || ||                                                                                                                                   A
GTCACCGCTTA GT   ACA                                        TTGTT TA  TC AT TA                                                                                                                                   
           T  CCT   TTTAACTCCCCCACGATCACATTTTTATATTACACTAATT     -  TT  T  A  GTTGATTTCATAAAAGGTTACTTATGGTTTTCGCGTATACTAGTTTTGTTAAAAGAGATAAAACTAAACACAGATAGAATTTTATAAGTATTTTTAGACACTTATATAACAAAACATATGAGTCTCATATA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2630442

CAGTGGCGGATCCACTGTTGGGGCTGGTTGGTGCGCCAGACCCAGCTCTAATCCCTGCCCCTAATTAATCATTAACAAGTCTAGTTAGTCATTACTGAAGAAAATTCCCAGACGGCAAAGATGCAGGCTTCCTCCCTGCTTCTACTGTCCAAACTGGTAAAATAGAATATACTCTGAGTATACAAAACAATATATTCACAGATTTTTATGAATATTTTAAGATAGACACAAATCAAAATAGAGAAAATTGTTTTGATCATATGCGCTTTTGGTATTCATTGGAAAATACTTTAGTTGATATATCTTTATTTGTTTTAATCACATTATATTTTTACACTAGCACCCCCTCAATTTACATCCTGTATTCGCCACTG

Copy Cancel