SE2630443

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7411
  • Oryza sativa
  • SE2630443
  • hAT
  • Hat65
  • Chr04:4208145-4208605
  • CATAGTGA
  • CATAGTGAAAAAAACC

Secondary structure and sequence

TSD    TIR
5'



3' 
       A        AG     --G        TCAACCGGAAAAAACCAGAACCAGAGGTCTCCACGGTTCGGTTGAGCTGAAAGACCGGACATGCATTCAACCCGGATTGAACCGGCTGAACCGGCCGGGTTTTGAATAAACCGGGCATTAAACCGCCCTGGTCAGACCGGGCCAAGGAGATAATGGGCTACATGAAGACCCAGTCTAGGCCCACGCGACTGTTTCTGT
CATAGTG AAAAAACC  ACCGG   CCGGCGGT                                                                                                                                                                                                      
||||||| ||||||||  |||||   ||||||||                                                                                                                                                                                                      A
GTATCAC TTTTTTGG  CTTGG   CTCCCTGG                                                                                                                                                                                                      
       C        --     CCA        GCCTGCTGGGGAGCCAAGTGGCCAGGCTGCCAGACTGGCCTCTTGGCGGCCAACTTGGCGCCAAGTTATTGATTATATACGTCATACATAAAGGAGATAATGTGTTCACTTTTCAGCCATCCTACCGATCTCGGCTCGCGAACGTCACGTTTCTGGGTCCAAGCTCAGAGGGGTGCGGTGAGTAAAGAGACTAAAAAC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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