SE2630444

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7412
  • Oryza sativa
  • SE2630444
  • hAT
  • Hat75
  • Chr06:6936327-6936873
  • CAGTGGCA
  • CAGTGGC

Secondary structure and sequence

TSD    TIR
5'



3' 
       AG     C  TTGTGGCAAGGTGTGGCAGCTGCCATAACTATCTGCCAGCAGTAACTATCAACTAAACAACAACACTACTGACTGTTTCATTGGTGGTTACCGTGATGATGGGGGCAATAAGCACTAATCTTTTAGTATTTGTACTAGTACAAGCTAATACTGGTATGGTGGAACAAGTTATCATGCATTGACCAAGTGATGATGCATCTGCATCGGTTGGTATTGTTCTTTAAGGAATTGAGCAAAAGTATAATTACTATTTTTTTA
CAGTGGC  ACCTT CC                                                                                                                                                                                                                                                                  
|||||||  ||||| ||                                                                                                                                                                                                                                                                   
GTCATCG  CCTGG GT                                                                                                                                                                                                                                                                  
       --     -  CGTGTTTTAATATCGATACCGCTTGAAAGATTTACAGGCATCATGGCTTTGTAAAAAATATTTTTTGGTGCTTGTATGGTTTTGTAATCATATATTACATATACTATTTTTTTTAATCACACGTATAGGTTATTTTGATATTCATTTATTAAATAACAAAAGTTATATCCACTTCTAAATAAGGACCTTCCACTCTCGGGGATCTCGGTAGGTTTACAAGGGTAAGGTTTAATAAGAGGTTTATAAACACCAATCGCA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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