SE2620445

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7413
  • Oryza sativa
  • SE2620445
  • Mutator
  • M106
  • Chr09:6715037-6715611
  • GGGTGCAGA
  • GGGTGCAGATCCCCTGGAGTTGGCTTCCAACTCCAACCGGTGAATTTGGACCAATCTGACCCCTTACTTTG

Secondary structure and sequence

TSD    TIR
5'



3'
     CA               GC      C    AC     A     ----GA    T   A   C   C    TTTCT     C     GT  -   T   A   C     AATTACACAT       -A      --------------- TCCTATTTACTTTTATTTTTTTGTGTTGTCCGTCCATTCAGATCAATACTCTCGGAAGAGCATTATAGATCATGGAGTAAAAAATAATTATCTTTAAACTTTTTTAACTGAGTTGTTATGAAATTAACGGTATTGAGACCTGTATCGAACT
GGGTG  GATCCCCTGGAGTTG  TTCCAA TCCA  CGGTG ATTTG      CCAA CTG CCC TTA TTTG     ATGGG TAGAT  AG CCA GTC CCT TTTCT          TTACAAC  GATATA               A                                                                                                                                                       
|||||  |||||||||||||||  |||||| ||||  ||||| |||||      |||| ||| ||| ||| ||||     ||||| |||||  || ||| ||| ||| |||||          |||||||  ||||||               |                                                                                                                                                        
CCCAC  CTAGGGGACCTCAAC  GAGGTT AGGT  GCCAC TAAAT      GGTT GGC GGG AAT AAAC     TACCT ATCTA  TT GGT TAG GGA AAGGG          AATGTTG  CGGGCA               A                                                                                                                                                       
     AC               -A      T    GT     C     GAATTA    C   A   A   T    -----     A     AT  A   -   -   A     ------GACC       AT      AAATAAATTTTCTTT TGATGTTACATCTCAGATATTTTTTTATAATAGATCATATCATCTCTTGTACAATGGAAGTTTGAAAGACCGTTGTTAATCTATTCTTGTTTGTTTTGTTTTTATAACGTGGCTATCTTCAAAGAACAAGACAGCTAATAATCCTACTTAC

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End