Plant MITE

SE2620446

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_7414
Oryza sativa
SE2620446
Mutator
M107
Chr02:21335917-21336700
GAGAAGTGC
GAGAAGTGCTTCTATGCTCCT

Secondary structure and sequence

TSD TIR

5'

3'

                     CAAT              AA                     C          A C     AC          -      G               T  C     CA              -   CCACCCCGTACCCAGCCGTCTCTCATCGATCGATTCGCGACGGCAATTCCCTCGCGACGCACCTGGAATGATATTCAGATAAGATCTGCATCATCTATGTCAAGCGGCCAAAAGGATTAGCTTTTGTAAAGGACGAAAATCACTGAATCAAAAAACAGGAGAATCGTTGGGATTTCTATCTAGGTTTCACTAGGTACAAGAAGCGGGTATTCTACCATGCAGGAGTTTGAGTCATCATGGATGGCCGCC
GAGAAGTGCTTCTATGCTCCT    AAAAAAACCTGCAC  AAATTAAAGCACATCAATGGT TGGATTAAAA G GATTA  AGGGTAAACC TCATTA CGAGGGGCAATTTCG CC GGAAG  AAAGTTCATATCCA TAC                                                                                                                                                                                                                                                         
|||||||||||||||||||||    ||||||||||||||  ||||||||||||||||||||| |||||||||| | |||||  |||||||||| |||||| ||||||||||||||| || |||||  |||||||||||||| |||                                                                                                                                                                                                                                                          
CTCTTCACGAAGATACGAGGA    TTTTTTTGGACGTG  TTTAATTTCGTGTAGTTACCA GCCTAGTTTT C CTAAT  TCCCATTTGG AGTAAT GTTCCCCGTTAAAGC GG CCTTC  TTTCGGGTGTAGGT GGG                                                                                                                                                                                                                                                         
                     --AC              CC                     A          C A     GA          C      G               T  T     AC              C   TCCGGCTAGCTAGGTAGCTAGACCCTCCAGCTGTGCCGTTGTCCCGATCTACCACTTCTAGTGGTCTAGTCGGCCCGTACACGCTCCTTACCCTCCCGCTGCTCGACACTCCCGATAACAGCTGAACAGCAGCAACGCGAGCCGCAACTCTGTCTAATATGTCATACTACTCTATATCCTGGTCAAGAGCTTCCCGTCACACCACACCTTCGCCGTCTGGTCTACCTCTTACCGGCGTAGGAGATGCCG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2620446

GAGAAGTGCTTCTATGCTCCTCAATAAAAAAACCTGCACAAAAATTAAAGCACATCAATGGTCTGGATTAAAAAGCGATTAACAGGGTAAACCTCATTAGCGAGGGGCAATTTCGTCCCGGAAGCAAAAGTTCATATCCATACCCACCCCGTACCCAGCCGTCTCTCATCGATCGATTCGCGACGGCAATTCCCTCGCGACGCACCTGGAATGATATTCAGATAAGATCTGCATCATCTATGTCAAGCGGCCAAAAGGATTAGCTTTTGTAAAGGACGAAAATCACTGAATCAAAAAACAGGAGAATCGTTGGGATTTCTATCTAGGTTTCACTAGGTACAAGAAGCGGGTATTCTACCATGCAGGAGTTTGAGTCATCATGGATGGCCGCCGCCGTAGAGGATGCGGCCATTCTCCATCTGGTCTGCCGCTTCCACACCACACTGCCCTTCGAGAACTGGTCCTATATCTCATCATACTGTATAATCTGTCTCAACGCCGAGCGCAACGACGACAAGTCGACAATAGCCCTCACAGCTCGTCGCCCTCCCATTCCTCGCACATGCCCGGCTGATCTGGTGATCTTCACCATCTAGCCCTGTTGCCGTGTCGACCTCCCAGATCGATGGATCGATCGGCCTGGGCTGGATGTGGGCTTTCACTTCCTGGTCGAAATTGCCCCTTGGTAATGACGGTTTACCCTAGTAATCACCTTTTGATCCGAACCATTGATGTGCTTTAATTTCCGTGCAGGTTTTTTTCAAGGAGCATAGAAGCACTTCTC

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