SE2620447

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7415
  • Oryza sativa
  • SE2620447
  • Mutator
  • M108
  • Chr11:1621794-1622357
  • GGGTCCAGA
  • GGGTCCAGATCCCCTAGAGTTAGATATAACTCTACAAGGTGGAGTTGGCTAAATATGTGTCATTCCGT

Secondary structure and sequence

TSD    TIR
5'



3'
     CA        A     -  A           AA                 A        T    ATACA  A G           AG  A         G       AAAC      C  ACCATGCAACAAATAAACTTGCATCAAGAATTTGTCATGAGATCATTTTTACTGTATAATTAGCACAAAAATTTCATGCTTCATCTATTATATAAAAAATCACACACATTAATATTGATATGGTTCATTGTATGTGAAAGCACTATATATGTCGGTATAC
GGGTC  GATCCCCT GAGTT AG TATAACTCTAC  GGTGGAGTTGGCTAAAT TGTGTCAT CCGT     TC A GGCTGAGATTA  CC CATTAATTT TACTTAA    CAGTAA TG                                                                                                                                                                
|||||  |||||||| ||||| || |||||||||||  ||||||||||||||||| |||||||| ||||     || | |||||||||||  || ||||||||| |||||||    |||||| ||                                                                                                                                                                 
CCCAG  CTAGGGGA CTCAA TC ATATTGAGATG  CCACTTCAACCGATTTA GCACGGTA GGTA     GG T TCGACTCTAGT  GG GTAGTTAAA GTGGATT    TAATTG AG                                                                                                                                                                
     AC        C     C  -           GC                 G        -    ACAAA  A G           AA  A         -       -ATT      -  GAATTTAATTACCAATACTGAAGGCTCCTTTGAATTAAAAAAATACGTAAAGGAGATATTATCGCTAAACTAATTTAAGAGTGTTTTTTTTATTATCTGGTCACAAAACAATAAGGGGTTTATTGTCTATATCAGCTAATTGAGATTTCGAAGTTCGTGA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End