SE2630448

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7416
  • Oryza sativa
  • SE2630448
  • hAT
  • Hat76
  • Chr09:8128334-8128845
  • CAAGGTAA
  • CAAGGTAATAAATAGTGT

Secondary structure and sequence

TSD    TIR
5'



3' 
                  ATA  GG      AAC  ATTAGTGTCTGTGTAGCGGATTGCGGATAGGGGCCGCTAGTGCGGACGCTAAGTTCCAATAGTAAATATAAGAAAATAACCATAAATTTATATTATATATCAATATTAACATCAAGTTTCACGTAAAAATTAGAATTTATAATACATTTTTAATTACTCATATATTTCATAACATAAAAAATATGAATCAACATATAGATATATAAGATAAATAAGATACAC
CAAGGTAATAAATAGTGT   GC  GTTGTT   GG                                                                                                                                                                                                                              
||||||||||||||||||   ||  ||||||   ||                                                                                                                                                                                                                              A
GTTCCATTATTTATCGCA   GC  TCGCGG   CG                                                                                                                                                                                                                              
                  --A  -A      --G  TTATCGCTGGCGATATCGCCATCGCCTGGAGATGACGATGGCGATGTTCCATCGCCTGACTTCTATCGTACAACGTTGAATCGCGGGCGATATCGCGAAGCGATGGCGATATCGTCGGGCAATATCGCGAAGCACTAACGATATTGTTAGGCGATAACTGAAACAACCTGGCAATATTGCGAATTTACAACAAGAAGTGTATACCTAACATCTTGAAATGTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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