Plant MITE

SE2620449

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_7417
Oryza sativa
SE2620449
Mutator
M109
Chr11:23081100-23081383
GAGTCCGGC
GAGTCCGGCTCAGGTGCAGGGAACCCTGCACATAGTAATATACAGGCCAAATCAAATTGCGACACCTGTCCAGGGTGGCCCTACTTAATTACGCATGCAACGGAGGTTTAACGAGGACTAAACGGGTGAATGGTTCTGTTACCTGATTT

Secondary structure and sequence

TSD TIR

5'

3'

                                                                     --C        CC           CG  --------  -C              G G  -  ----   -       AT G
GAGTCCGGCTCAGGTGCAGGGAACCCTGCACATAGTAATATACAGGCCAAATCAAATTGCGACACCTGT   CAGGGTGG  CTACTTAATTA  CA        TG  AACGGAGGTTTAAC A GA CT    AAA CGGGTGA  G 
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||  |||||||||||  ||        ||  |||||||||||||| | || ||    ||| |||||||  | T
CTCAGGCCGAGTCCACGTCCCTTGGGACGTGTATCATTATATGTCCGGTTTAGTTTAGCGCTGTGGACA   GTTCCATC  GGTGGGTTAGT  GT        AC  TTGCCTCCAAATTG T CT GG    TTT GTCCATT  C 
                                                                     TAT        CA           TG  TCATTGTT  AT              G G  A  GTGT   A       GT T

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2620449

GAGTCCGGCTCAGGTGCAGGGAACCCTGCACATAGTAATATACAGGCCAAATCAAATTGCGACACCTGTCCAGGGTGGCCCTACTTAATTACGCATGCAACGGAGGTTTAACGAGGACTAAACGGGTGAATGGTTCTGTTACCTGATTTTGTGGGATCGTGGTTAAACCTCCGTTTACATTGTTACTTGGTTGATTGGGTGGACCTACCTTGTATACAGGTGTCGCGATTTGATTTGGCCTGTATATTACTATGTGCAGGGTTCCCTGCACCTGAGCCGGACTC

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