SE2610451

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7419
  • Oryza sativa
  • SE2610451
  • Tc1/Mariner
  • St47
  • Chr02:31514588-31515165
  • N.A.
  • CTCCCTCCATACCGACAAAACAAGTCGTTT

Secondary structure and sequence

TSD    TIR
5'



3' 
          A  G                AAAACAAAATTG       CAAGGAGTGATTAATCAGGGCTATTCTTTCATGTTTTCCCTTATTAAATGAGGGTGCGGGTGCATTCATTTGAGAAACAAACAGAACTCAAATAGCTAGTGCAGTGAGGTTTGAAGGCTTAGTGCCTAGGTTCGATTCCTGGTGGGCTTGTTTTTTTTGCTGATTTTGCATGGTGCTCGTTTGGGCCCTCGTCAACAGTGTCCAGCGCGTCGACGGAGTCCGGCGCCTTGACGTACTCTAGCGAC
CTCCCTCCAT CC ACAAAACAAGTCGTTT            TGGTTAC                                                                                                                                                                                                                                                     
|||||||||| || ||||||||||||||||            |||||||                                                                                                                                                                                                                                                     T
GAGGGAGGTG GG TGTTTTGTTCAGCAAG            CCCGAGA                                                                                                                                                                                                                                                     
          C  G                -----------A       ATCAGGCAAAAGTGTTTTGTTCAGCAGCAAGGAGTCACCCCATATCAAACCTGCGCATACGGGGACTACGCTCTCGGCTCACTGCTCGCCGCTCCGTTCTTTGCTCCGCTGCACTAATTACGGCGGAATTCGACTTACCTGCACTAATTACCGTGTGCGTGCAGCGAGCGTGTGCGAGCGGCGAGCGTGTGCGCGCAGAGAGAAGGAACGGCGGGCCGACGGCTCGCGGTACTACCTCATGCAGC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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