Plant MITE

SE2630453

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_7421
Oryza sativa
SE2630453
hAT
Hat77
Chr09:8983452-8984085
CAGGCCCG
CAGGCCCGTC

Secondary structure and sequence

TSD TIR

5'

3'

    C     GA  GC  T  GCCAAATAGGCACCTGCACAGGGCCCCCGATTTTTGGGGCCCATATAAACATGAAGGCCCACTTTAGCTATAGTAATACAACACAACATCAGCTAATAGGCAATAGCTCAATTGGTAGATCAACAATGCTAGGCCTGGCCCAAATTCAAGAGGATGTTGTGCGATCGTTGATTTTGTCCTGTTGTTAGTTGCTGAGCAATCTAATTCCACGTGGCGCCGATTTAAGAGACGAGACGATGAGACGTCGATCCCAATTCCATGCACGGCGATTGAGGCGGCGGCGACGACGATATAACTT
CAGG CCGTC  TG  CA GT                                                                                                                                                                                                                                                                                                          
|||| |||||  ||  || ||                                                                                                                                                                                                                                                                                                           
GTCC GGCAG  GA  TC CT                                                                                                                                                                                                                                                                                                          
    C     -A  --  -  TAAACCCCAGGATCCCCACTTTACGTTTCACCCTGGGATATAAATTTTTTTAGTACAGATTATATTTATTTTGTATAAAAGTTATCTACGTTATACAAGATTATAATACTTAAACGCTAGATAGTAGATGAGTTAGTCAGATTATAATGGGCAGACTCGTAGGCTCCAGCTCGACAACTCCCAGCTCAGCTGTTACTGCTCGCTCGCTCCTCCTCCTTCCGTCCTCGATCCTCTGCTCTGTTCCATCGTTCCGTTTCGGCGGCGGCGACGGCAATCCTCGTAACCTTAGCGTTCGTCG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2630453

CAGGCCCGTCGATGGCCATGTGCCAAATAGGCACCTGCACAGGGCCCCCGATTTTTGGGGCCCATATAAACATGAAGGCCCACTTTAGCTATAGTAATACAACACAACATCAGCTAATAGGCAATAGCTCAATTGGTAGATCAACAATGCTAGGCCTGGCCCAAATTCAAGAGGATGTTGTGCGATCGTTGATTTTGTCCTGTTGTTAGTTGCTGAGCAATCTAATTCCACGTGGCGCCGATTTAAGAGACGAGACGATGAGACGTCGATCCCAATTCCATGCACGGCGATTGAGGCGGCGGCGACGACGATATAACTTGCTGCTTGCGATTCCAATGCTCCTAACGGCAGCGGCGGCGGCTTTGCCTTGCTACCTTGTCTCGTCTCCTAGCTCCTGCCTTCCTCCTCCTCGCTCGCTCGTCATTGTCGACTCGACCCTCAACAGCTCGACCTCGGATGCTCAGACGGGTAATATTAGACTGATTGAGTAGATGATAGATCGCAAATTCATAATATTAGAACATATTGCATCTATTGAAAATATGTTTTATTTATATTAGACATGATTTTTTTAAATATAGGGTCCCACTTTGCATTTCACCCCTAGGACCCCAAATTCCTAGAGACGGCCCTG

Copy Cancel