SE2630454

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7422
  • Oryza sativa
  • SE2630454
  • hAT
  • Hat79
  • Chr04:30669181-30669587
  • CATAGTTA
  • CATAGTTATTGAGACTGGACCGG

Secondary structure and sequence

TSD    TIR
5'



3' 
                       TA          T AGGCTC    ---T     ----   --     -   TCAACCGGTTGAACCATTGGTCTAACCCGGTTCAATAGTTATTAAATATATTACTCATTCCTTTCAAACACAACAAGGATGATAGCCTGGTGGTTGGTGAGGGCTCTTTTTCCCTCATTTTCCCCCGACTGCTCCCTT
CATAGTTATTGAGACTGGACCGG  ATTGAACCGG G      TTGG    TCGAT    GGT  TCACT GGT                                                                                                                                          
|||||||||||||||||||||||  |||||||||| |      ||||    |||||    |||  ||||| |||                                                                                                                                           
GTATCAATAATTCTGGCCTGGCC  GGCCGCCAGC C      GGCC    TTGGT    ACC  GGAGA GGC                                                                                                                                          
                       -T          - -----T    CTTT     CTTG   TC     C   CAAGCCAGGTCAATTTTCTGGCCTATACGTTAGTTCGGCCATATTTGGCCAATCCGACAGGCCAAAAGTACTTTTTGGCGATATCTTGGCCTCTTTTTTGGTACCAACTTGGCCGGAACGCTCCCTCACCCACGTACG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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