SE2650455

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7423
  • Oryza sativa
  • SE2650455
  • PIF/harbinger
  • To88
  • Chr04:21944198-21944556
  • GGC
  • GGCTCCGTTTGGCTAATGGG

Secondary structure and sequence

TSD    TIR
5'



3' 
     C       T      TTATACCCAT            ------------------------ATA      --- GGTAGGATGTGGTGGTAGTTTATATGAAGGGAAATTTTATCCCATGTTTGGTTGGATGGATTGGAAAAGAAAGTTTCTAGAAGAATGACCAAAATACCCCTTCAAATTATGCTA
GGCTC GTTTGGC AATGGG          TGGGAAATGGAT                           ATATCC   T                                                                                                                  
||||| ||||||| ||||||          ||||||||||||                           ||||||   |                                                                                                                   
CCGAG CAAACCG TTACCC          ACCCTTTACCTA                           CAAACC   A                                                                                                                  
     A       T      TACTCCTCAC            CAATAAAGGTAAAAAGTATAAAGGTGG      CAC CCTACCCTCACCCTATATCTTAGGATGAACTAACTCCCATCTAACTGGCGATCCCTTTTAATGACTTAATGGGAGTGGTAAACTTGAATATCGATACGACAAACAAATGAGTAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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