SE2630456

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7424
  • Oryza sativa
  • SE2630456
  • hAT
  • Hat80
  • Chr10:17807287-17807713
  • CATAGTAA
  • CATAGTAAAAAAAACGGACCAGATCGACGGTTG

Secondary structure and sequence

TSD    TIR
5'



3' 
  T                    --     -G    AAT   AAAAAACCGGAACCGGCAACCTTGGCGGCTCGGTTCAACAAAAAGACGGCCCCTGCAATCGAATAGGTAAAAGAACGGTGAATCGGGCAGTTTTTATGAGAACCGGTGAACTGGTTGTGATTTTTTAATAATCGAACCAGTTTTTAATTTGTCCTAGTAGTATGGCATTATGAA
CA AGTAAAAAAAACGGACCAGA  TCGAC  GTTG   CGG                                                                                                                                                                              
|| ||||||||||||||||||||  |||||  ||||   |||                                                                                                                                                                               
GT TCATTTTTTTTGCCTGGTCT  AGCTG  CGAC   GGC                                                                                                                                                                              
  T                    CT     GG    --C   AGCCAAGTGGCTAGTTTGGCGGCCAAAAATAAATAATTATCATATAAACTAAACGTAATAAAATTTATATCTTAGTAGTGTTTAACCACTTTTATACGTATTTATTTGATCATATATATAATAATATACCAGTGTTGCAGTTTTCTTTATTTACATCACACCATTGTATTATTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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