SE2630457

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7425
  • Oryza sativa
  • SE2630457
  • hAT
  • Hat81
  • Chr02:32334185-32334630
  • CATAGCTA
  • CATAGCTATTAGGACCGGATCG

Secondary structure and sequence

TSD    TIR
5'



3' 
     C                A GG --  G      AAAAACCAGAACCAGGGGCTTAGCAGGTCAGGTCCAATTTAAAGATCGAACGTGCAATCAACCCAGGAAAAATCGATTGAACCACCAGTTTTTGGAAAGAACCGGGCAAGTAAACCGCTAAAGAACCGGGTGCATGTGGGGAAATTGGGTGAGAAAGGGCCCAGCGCAGGCTGAAACGTGGGGGAGA
CATAG TATTAGGACCGGATCG C  T  CT ACCCAA                                                                                                                                                                                           
||||| |||||||||||||||| |  |  || ||||||                                                                                                                                                                                           G
GTATC ATAATCCTGGCCTGGC T  G  GC TTGGCC                                                                                                                                                                                           
     A                C -- TA  -      AGCATCGGAGCCAAGCGCCAAACTAACCAAACTAACCAACTTGGTGACCGGGTTGTGCCAAATTTATTTAACTCCATATATCGGATTGACGTGTTCATACGTATCGAGTCACCACCCCAACGAACTCAGATTTCCCCTCTAACTCACAAACTTGGGGAGTTGGGTGGAAAAAGAGGATAAAAGAAGG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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