SE2620458

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7426
  • Oryza sativa
  • SE2620458
  • Mutator
  • M112
  • Chr02:31539092-31539514
  • GGGACTACC
  • CTATACATTTGTCGACAAATTTTTCTCCAAAAATTTGATAGATGTAATTATAGTACAATCGTAGTGTAATTACACTGTAACTTATATGTAATTACACTGTAACT

Secondary structure and sequence

TSD    TIR
5'



3' 
GGGACTAC     C                      A                                                      A                    TGCATGTAACTAC          A       G     CAT      GAA      -----     ATTACAAGATTTGTTTTGGTGAGAAAGAAAACAAATCATAGCAC
        CTATA ATTTGTCGACAAATTTTTCTCC AAAATTTGATAGATGTAATTATAGTACAATCGTAGTGTAATTACACTGTAACTT TATGTAATTACACTGTAACT             AGTGTAACTT TATGTAA TTTCA   AATTTT   TCGTTG     GATCT                                            
        ||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||             |||||||||| ||||||| |||||   ||||||   ||||||     |||||                                             
        GATAT TAAACAGCTGTTTAAAAAGGGG TTTTAAACTGTCTACATTAATGTCATGTTAGCATCACATTAATGTGACATTGAA GTACATTAATGTGACATTGA             TCACATTGAA ATACATT AAAGT   TTAGAG   GGCAAT     ATAAA                                            
GCTAAAAC     A                      G                                                      C                    -----------TA          C       G     -TT      --A      GTACA     GCCATTTTACCTCCAGCACCCTTGTTTAAGAAAGTGTATACACA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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