SE2620459

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7427
  • Oryza sativa
  • SE2620459
  • Mutator
  • M115
  • Chr01:27932133-27932494
  • GAGGATTTT
  • GAGGATTTTTACGGTACAATATACTGCTAGTATATACTG

Secondary structure and sequence

TSD    TIR
5'



3' 
                                       TAAGTATATAT      ACGGTGTAGATTGATTTAATTTTTTTATTTAATTAGATTGCAGTATAAAGTTTGAAAGGATAATTTTATCTTTTCTTCGTTATTCTATCATCAAATCGTGCTATCGTCACGTGCTTTGTCATTAAATGGC
GAGGATTTTTACGGTACAATATACTGCTAGTATATACTG           GATCTA                                                                                                                                  
|||||||||||||||||||||||||||||||||||||||           ||||||                                                                                                                                  G
CTCTTGAAAATGCCATGTTATATGATGGTCATATATGAC           CGTCAT                                                                                                                                  
                                       -----------      ATAGTTTCCCGTATAATCCTTAAACTATCTTTTATTTTGTTGTGAAATCATTAAAAACCAAGTTAAACTTAAATTAACTCTCATGGACCAAGGACCTAGAATAGCACGTGATCCTCTCCTCGTAGGACTC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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