SE2650460

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7428
  • Oryza sativa
  • SE2650460
  • PIF/harbinger
  • To57
  • Chr01:6679554-6680152
  • GAG
  • GAGCATCTTCAATAGCCTCTCTAAATCGAACTCTCCAAATTAA

Secondary structure and sequence

TSD    TIR
5'



3' 
                      AA   GA         A    CACTCTTA       C  TCCATCTGATTTGGCTAAGTCAAACTAATTGTTCACTTCAACATCCTCTCCATCTATCCTCTTTATTACAGATCTATTACAAATGGAACCCATATGTCAGTCTCTACTACTCTTCTTCCTCCTCTTCCAACCCATTCTCTACTACTACTTCCTCCTCCCTTCCTCCTACTGGACTACTACATCCTCCCCACACTATCTCCTCCAATGCGGCGACGGCGGACGGTGGGCACGCGAGGCGATGACG
GAGCATCTTCAATAGCCTCTCT  ATC  ACTCTCCAA TTAA        TAGTCAA TC                                                                                                                                                                                                                                                    
||||||||||||||||||||||  |||  ||||||||| ||||        ||||||| ||                                                                                                                                                                                                                                                     
CTCGTAGAGGTTGTCGGAGAGG  TAG  TGAGAGGTT GATT        TAAAATC GG                                                                                                                                                                                                                                                    
                      --   AG         A    --------       -  TAAGATCGGTTTTATTTTGCACGAGGTTGTCGGAGAGATTGGGAGGGAGGTGATCGGTTTAAACCGGTGAGATAAACCGACCGGTTACAACCCGGGGTGTGTCGATTAGAGGAGGTGGGGGTGTGCCGTAGTCCCTCTCCGTGCCCTCCTCGTGCTCGTGCCGCTGGCGGCCGGAGACAAACGGCGGCGTGGTTCGGTCAGTGGCCGGCGGCCGGAGGCGCGCCGCTCCATAAGGGGCGGCCGG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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