Plant MITE

SE2650461

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_7429
Oryza sativa
SE2650461
PIF/harbinger
To57
Chr03:11176630-11177394
GAG
GAGCATCTCTAACAGTCT

Secondary structure and sequence

TSD TIR

5'

3'

        C         ----AT  -   - TT   TGTCCAAATGTCTATTTGGCCAACTCTCCATTTAATTTAGCAAGTCAAATTGTCTTTTACTCCAACAGCCACTCTATTCGTCCTCTATATTTTGAGTTTATTACAATTGGGCTCACATGTCAGTCTCTACACCTCCTTCTCCCTCATCTTTCTCCCATTCTCTCCAAACCCCCCTTCCCTCTCTCATCTGCCGCCGCCGCCCCATCCCCATCCCCACCGCCGCTCGGGCTGTGTCCCCATCCGCCGCCGCCGCTGCTCAGGCTCCACCCGTCGGTGCCGCTCTTGGCGGCAAATCCGTGCGCACGCAAGGCAGGCTCGAGGCGACGGCGAGGGAAGGCCACAATGGCGG
GAGCATCT TAACAGTCT      CC AAA T  GAC                                                                                                                                                                                                                                                                                                                                                             
|||||||| |||||||||      || ||| |  |||                                                                                                                                                                                                                                                                                                                                                             C
CTCGTAGA ATTGTCGGA      GG TGA A  GGT                                                                                                                                                                                                                                                                                                                                                             
        A         GGAATA  G   A --   TCAATATAATATCGTTAAAACCGAGTTTAAACGTGAGGTTGTCGGACCGACCGGTTTCAGCGAGCGCGACCGATTTAGCACCCGGGGTGGAGATAAGAGAGAGGGAGGACATCGGAGAGAGGAGGAGGGTTTAGGTCACGGCGGGCATCGTAAGAGAGGCGGCTGCGGCGGGTAGGCGCGGTGGGGAGGCGGCCGCTTCTCTCGAGGGAGGGACACGGCCGCTTCTCTCGAGGGAGGGACGGACGGGGTGGTAGACGGGTCACGGCTGCAGCAGCAGGAGGGCCGAGGCAGCAGCAACAGCGGGAGTGTCGCGGCGGCGGCAGCAGGAGGGTCACAGTCGGCGGGATCG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2650461

GAGCATCTCTAACAGTCTATCCAAATTTGACTGTCCAAATGTCTATTTGGCCAACTCTCCATTTAATTTAGCAAGTCAAATTGTCTTTTACTCCAACAGCCACTCTATTCGTCCTCTATATTTTGAGTTTATTACAATTGGGCTCACATGTCAGTCTCTACACCTCCTTCTCCCTCATCTTTCTCCCATTCTCTCCAAACCCCCCTTCCCTCTCTCATCTGCCGCCGCCGCCCCATCCCCATCCCCACCGCCGCTCGGGCTGTGTCCCCATCCGCCGCCGCCGCTGCTCAGGCTCCACCCGTCGGTGCCGCTCTTGGCGGCAAATCCGTGCGCACGCAAGGCAGGCTCGAGGCGACGGCGAGGGAAGGCCACAATGGCGGCGCTAGGGCGGCTGACACTGGGAGGACGACGGCGGCGGCGCTGTGAGGGCGACAACGACGACGGAGCCGGGAGGACGACGACGTCGGCACTGGGCAGATGGTGGGGCAGGCAGGGAGGGAGCTCTCTTCGCCGGCACAGGGAGGGAGCTCTCTTCGCCGGCGGAGGGGTGGCGCGGATGGGCGGCGTCGGCGGAGAGAATGCTACGGGCGGCACTGGATTTGGGAGGAGGAGAGAGGCTACAGGAGGGAGAGAGAATAGAGGTGGGGCCCACGATTTAGCCAGCGCGAGCGACTTTGGCCAGCCAGGCTGTTGGAGTGCAAATTTGAGCCAAAATTGCTATAATATAACTTGGAAAGTGGGATAAGGAGGCTGTTAAAGATGCTC

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