SE2650462

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7430
  • Oryza sativa
  • SE2650462
  • PIF/harbinger
  • To58
  • Chr02:699869-700605
  • GGC
  • GGCCATGTGTACAACGCGTGACCCTGGCCTATGGTCTCGTAGGTCCACGTCGGAGCTGAGCC

Secondary structure and sequence

TSD    TIR
5'



3'
    CAT        C C   A  -CT   --  A        T   -T      C   GCT          GGCACGAGTTTGGGTGGTCTCGCAGACTGTCAGTGAGCTTGCAGAGGAATCGGTGCAAATGCTGCGCCTGGGCTGGGGAGCTGCGAAGCCACAAGCCGAAGCCTTGCGTTCGAGGAGTCGGCGCCCCGCGCGTTGCCTCGTCCAGTCCCCCGTGCCGTGGTCGTCGTCGCCTCGCCAGATCCACCACAGCCACCATGGTCGTCGTCGCTGCTCCCCGCCACCGCCACCGCTACTCCCCGCCTTCGCTAGATCCGCCGTCGTCAGAGCTCGAGCGGCGCAGATCTGCCGCCGGAGGGGAGGGC
 GGC   GTGTACAA G GTG CC   GGC  CT TGGTCTCG AGG  CCACGT GGA   GAGCCGAGCT                                                                                                                                                                                                                                                                                                              
 |||   |||||||| | ||| ||   |||  || |||||||| |||  |||||| |||   ||||||||||                                                                                                                                                                                                                                                                                                               
 CCG   TACATGTT C CAT GG   TCG  GA ACTAGAGT TCT  GGTGCA CCT   CTTGGTGTGT                                                                                                                                                                                                                                                                                                              
C   ---        A -   C  TAT   TT  C        -   GC      T   -AT          TTTCAGTGTGATGGGTGTCACTTTCGGTGAGGTTTTGCAAAAACGTACAGTCGGGGATAGATAAATATACAGTCGGGAACATAATAGTTTGGATAACTTTGAAATATAAAACTTGGGATATCATTAGTTTTCTTCATATACATATGAGGATTTGTTGAACTCTGGGTGACAGTCGGAGAAGGGTAGGGGAAGAGAAAAAATAAGAGGAGAGAGAGAGAAGCTAAAGAAGAGGTGGCTGCGAGAAGAGGAGAGGGGAGGGGGGTGTAGCGGCGGGAGAGAAAAGGAAGAGGGGAGGGGAGCGA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End