SE2650463

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7431
  • Oryza sativa
  • SE2650463
  • PIF/harbinger
  • To63
  • Chr04:26173539-26174212
  • GGG
  • GGGTGTGTTAGGTTGGGCT

Secondary structure and sequence

TSD    TIR
5'



3' 
         A         TTTCAACCTGC     - TTTTGCAAAATCCAAAAACCAAGGCCTAAAAGCTACAACTGTTTTTTTTCCCAAAGCCAGCTTTTGGTGTAGTACAAATCAAACACACCTCTACCCTTGCTTTCACATGCTTTCGAGGAAAAAATTACCTACCACTGCCATTAAAAAAAACGGTTTGCTTTTCTTTTTCTCCCATCCCTTCCACAAGCGTCGCTCCTCATCCTCCTCACTTCGCCATCGCCGCTAATCCTCCTCCCCGCCGCCGCCGCCGTCGCCGCTCCTCCAGTCGAGCTGCCCGTGCGTGCGAAGTCGTCGTTGTTCAGTC
GGGTGTGTT GGTTGGGCT           TTTTG C                                                                                                                                                                                                                                                                                                                
||||||||| |||||||||           ||||| |                                                                                                                                                                                                                                                                                                                 
CCCACACAA CCAACCCGA           GAAAA T                                                                                                                                                                                                                                                                                                                
         G         -------CACC     C TTTTTATCGACACACGACACTGAAAAACTTTTCATCGACACTTTTTTGGTTTTCGAGCAAACCAATGTGTGTCTACCGAAAACATTTTCGAAGAGGGGATTGCTCATCTGGGGTGTACAGTATATGTATCCATAGAAGAGGTAGGAGGGGACTGCTCGTACGACCGCCGACTGCTGAAGCGTGCACACCCGCCGATCGAGCCACTCCTCCGTCTCCGTCTGCGCTCACCCCGCCTCCGGCGGCGCGTGCGCGCGAGCGGCAGCGGCCTCGAGGTGATGCCGGTGGAGGGTACGGGCGGCTGCTG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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